Scaffold Ga0272420_1000061

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000061
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 156305
• Total Scaffold Genes: 181
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 111 (61.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F013598	Metagenome	269	Y
F021452	Metagenome	218	Y
F036036	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_1000061147	F000597	N/A	MKDVLISSMMSMSDDSFASESLTIECVLSSNKISYSLKSLIDIKAADYLFIDEVIAQIVCDQLQIKSLTLIKAKSIREFNDHYAKKLIIYVIYLNLTVQNHTIDTAFMLII
Ga0272420_1000061171	F013598	N/A	VNFIINLFDSSEYNIILTIICRLSKERHYISYIIDDEDITVEKTAEMLIQ
Ga0272420_1000061172	F036036	N/A	MLVSLIHHLFSCFDQSFTSEDQCVVHLFRYILDSINLQAFASAFILDDVKVEAHMRMKALIHEEEN
Ga0272420_1000061174	F021452	GAG	MLISCFINMLDNSFDFKSFIVNIILSSLEKIFQFFALINIEVTDMTFIDDSLISELCEHFDIQSISLFKLKLIHSYNKIFDRIFITHALYISVIIQEHKNEMMSLLITHLD