Scaffold Ga0272420_1000043

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000043
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 172805
• Total Scaffold Genes: 194
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 98 (50.52%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019260	Metagenome	230	Y
F028978	Metagenome	189	Y
F038010	Metagenome	166	N
F044227	Metagenome	154	Y
F058565	Metagenome	134	Y
F061401	Metagenome	131	Y
F081945	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_10000431	F028978	N/A	NERCRYQRTTILTSNRMKIADLEEKENDESIYRLILEANRINKNYILLREVVLKDEAQYEDTKLRDCRVQNKILYRSDLL
Ga0272420_100004313	F061401	N/A	LNNDQRVIREIKNKIKCINDLSKTIFHRVTVVTQSVNHAKSDQLKSRDAILTSVKEVNILVESCFICHKSDHSFKECLNQSTKINAVNKKYDRFDFDSNFDSKN
Ga0272420_100004315	F081945	N/A	MSSHSFTEERFEEFRNRFSQISDADSLKSRMKSSSVALFIHEDDESFAEMIISLMFYEI
Ga0272420_100004317	F019260	N/A	MIQELKSMSRINIKSEKYSNSELYIEERENKLNQFIFELISKLKLNANRYSTFESRFLYEYSRLSRNAVAQALSRITAQHDKLVTIEQLVVLLRQVFDDSDKQEIAQRFISALRMRNRIFIKYLFDFQQYIDAIEYDIVIRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLLKSKAVIHSVSVISTVFAYLVKYATLLTDLKATISSSKNLMNLSIINMKKRDSLTLEKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLQAVSLFALAIFIDNLAFNTSLVLKKV
Ga0272420_100004318	F038010	N/A	MNNDHLVLSDNLESNKINVNLSVLIDIDVIDYAFIDDSFAQRHSLFCFSLSEICILQRFDDQSVVFNSITHYALVKLRVSSREFKETLFYVTQLSQFSVVLDLL
Ga0272420_1000043183	F058565	N/A	MMMNYINHSNVNLKTIASDVNLSQENRNVKSKHLCNDEKNIANIIDLLIKISMLKKEKSKDHS
Ga0272420_1000043190	F038010	N/A	MLSDNLESNKINVNLSVLIDIDVINYAFIDDSFAQRHSLLCFSLSEICILQRFDNQSVVFNSITHYALVKLRVSSEELEETLFYVTQLSQFSVVLDLL
Ga0272420_100004324	F044227	N/A	MQLRMKSSDSEACTHALLELNSSAIKNATRYRLLKLLNNHRDHERFQSSNENDDENEASEAI