NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000023

Scaffold Ga0272420_1000023


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000023 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)207268
Total Scaffold Genes240 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)134 (55.83%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F006206Metagenome378Y
F025887Metagenome199Y
F041516Metagenome159Y
F061402Metagenome131Y
F065269Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_1000023220F001253GAGGVTFIKDAMKDVLISSTTSSSNDFFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKFKPIREFDDHYAKKLIIHAIYSNLTVQDHMKRFVSMLIIRLDQHQMILEKT
Ga0272420_1000023227F025887N/AMSDNSFNFKSFTVDVILNSLKKIFRFFALIDIKVIDMTFIDESLMSELCKRFDIQSILLLKSKLI
Ga0272420_1000023228F065269N/AMTRSSESASIAHYELQNARRESLLLQNQTASEEEDMNASLNTEEKNMNALLFNHEMIKISISTELNA
Ga0272420_1000023232F041516N/AMIQKVIHIHEAYNSSLRDYEIIHEKENLSDIEKMLHMSKESILVEDFNLHHFT
Ga0272420_1000023233F061402N/AMTEFVNNNAISSSIEQLAFFLNKSFHSCMSFNLNSTEYEITQARIEASKAKNIFEHMK
Ga0272420_1000023238F006206GAGLCKLDEILSKENYFEKSFLIDAHLISQNQSFSLRSLIDSDSVIYMIIHSNLVDKVCEKLKIQSISLAKEKLIRDYDEKISKKIITHKILLNLIIESYKKLTVSMLIADINHHEVILSKF
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