Scaffold Ga0272420_1000006

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000006
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 239912
• Total Scaffold Genes: 230
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 92 (40.00%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008668	Metagenome	329	Y
F021216	Metagenome	219	Y
F021452	Metagenome	218	Y
F025887	Metagenome	199	Y
F040408	Metagenome	161	Y
F048019	Metagenome	148	Y
F065269	Metagenome	127	Y
F071806	Metagenome	121	Y
F075494	Metagenome	118	Y
F079402	Metagenome	115	Y
F087980	Metagenome	109	Y
F098340	Metagenome	103	Y
F102180	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_1000006144	F071806	N/A	MKLQSQIIALDSIQLHLSSVISALLQILALMNLEIEEFDVKNIKLQLDQDTLNLDEDSANILTQTL
Ga0272420_1000006149	F087980	N/A	VIENSVEIFRVMQELQNQVRQHDIIISFSFIILNSSIYIKFNSQFLTTITQIIAQILNNQSSFVIHLSANSVAVFITFRFKKLLDIFKYERDKDQLNA
Ga0272420_1000006152	F048019	N/A	VNEHAFKLFFAQVFAKALQDELTVYALVMINIIKESIIEHQVKVMNNMTNCITNTLEMQTLLVELKEYEDVFLTESADKLSLHEDHDHAIEIIAESSYELLYNLSNTELVTLRQYLDDVLAKE
Ga0272420_1000006156	F098340	GAG	MIKVAAYQTLVKKKNVKIFTLIISEINKMLSSIKDSAKLNEMISVMSLKKLKKKLLIVYHDFLNVFDREKTTQLLLH
Ga0272420_1000006157	F021452	N/A	MLDDSFDFKSFIVNVILSSLKKIFRFLALIDIEVTDMTFIDDSLISELCERFDIQSISLFKSKSIRSYDKIFDRRSITYALYISVTIQEHKNEMMFLSITHLNQHKIIIDNL
Ga0272420_1000006158	F079402	N/A	MQNKLKMNKNHFSIEEIKIAYVKSRVSETTIKHIALRMRNTITNSFLKAEEILSIINKMYDDPNQHHTTQRQFLKLYQNKIFFHKF
Ga0272420_1000006159	F065269	N/A	MTRSTESESVSIARYELQNARRKSLLSQNQTASEEENMNTSSNIEEENMNALLFDHEMIKISISIELNA
Ga0272420_1000006162	F040408	N/A	MYDYKSIFDIYIKNDTMKEEVSAAKKRVEMLQDVQNTLMQ
Ga0272420_1000006176	F008668	N/A	MSFDSDMTNDETTYEQLEARKANNIVIQIKELLNFNHQQLKKTKLIIEVQINKHKRDIIYEVDD
Ga0272420_1000006190	F021216	N/A	MFQIKSRMKSNAMRREHHKLEKALRNHECSNDDHLNDTLNEHTESISNCDIIKESDEREK
Ga0272420_1000006195	F025887	N/A	MSDDSFDFKSFTVDVILSSLEKIFRSLALIDTEVTDMTFIDESLMLELCERFDIQSILLSKSKSIQSYDETSD
Ga0272420_1000006211	F048019	GAG	VYALVMINVIKESIVEHQVKAMNNMMSYITNALEMQTLLIKLKEYENVFLTESADKLSLHEDHDHAIEIIAKSSYELLYNLLNTELATLRQYLNDVLAKE
Ga0272420_1000006212	F075494	N/A	MINNVEKMFVHSVSEQRYSAKHVKSKSQDEIYCIQVINEVEKMFIHNVNKNMNTCSAMHVRSMLLKIITLAMQEMHLDEVHFLRNKISQLESTTLRSTDIEMSIHKNCNVVEKQLNSVAETVDCKQLISCAIVKVLTIHETTYNFSSKFIVELIKILQQEDEFVVRLKADETMSI
Ga0272420_1000006221	F102180	N/A	LKESTLIITHHEKLKELIARMKHFTDVVTKNQEYHEKIYKVYSDSQTSLKTVKVIISTKDQTRLQSVQIAHESI