Scaffold Ga0272420_1000004

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000004
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 285062
• Total Scaffold Genes: 348
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 200 (57.47%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F013598	Metagenome	269	Y
F019260	Metagenome	230	Y
F021896	Metagenome	216	Y
F038010	Metagenome	166	N
F074204	Metagenome	119	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100000414	F000597	GAGG	VTFIKDAMKDVLISSTTSMLNDSFVSESLTIECILSSNEISYSLKSLIDIEAVDYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHTIDTASMLITRLNQHQMILEKT
Ga0272420_10000042	F019260	N/A	MIQELKSMSRINIKSEKYSNSELYIEERENKLNQFIFELISKLKLNANRYSTFESRLLYEYSRLSRNAVAQALSRMTAQHDKLVMIEQLVVLLRQVFDDSDKQEITQRFISALRMQNRIFIEYLFDFQQHIDAIKYDVVIRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRITVQNLFKSKAVIHFVSVTSTVFAYLVKYATFSTGSKATISSSRNFMNLSIVNMKKQDSLILEKHQHRMINHLCLYSDKSEHQTAICNSKLKIQLQVVSLFALAISIDNLAFNTSLVLRKV
Ga0272420_100000420	F013598	N/A	MNFIINLSDSYDYNVILTVICRLSKKRHYISCIIDDEDITVEKTAEMLIQ
Ga0272420_100000426	F021896	N/A	MMKNNLESEDFLKSVECNLTFLRSDKEYIFSDEMSERDSYSTIVINESFIEVRKI
Ga0272420_100000429	F074204	N/A	MIVFCILRQAQSRVLILALIDSEVSTYVFMNKFFMQQHHLLLHQLTHSCRLQEFDDQVTLIDDIIHIIEITMILDEHIKKLFFYVIELSQYFIIMSLS
Ga0272420_10000043	F038010	N/A	MNNDHLVLSDNLESNKINVNLSVLIDINVIDYAFIDDSFAQRHFLPCFSLSEICILQRFDDQSVVFDSITHCALVKLRVSSEKLEETLFYVTQLSQFSVVLDLS
Ga0272420_100000431	F001951	GAG	MMTMTKFKFIDSSRNERERDKDIVKSTVTKMMIFEFKKLLVNAKMFLTLMNETMMKMK
Ga0272420_100000432	F102181	N/A	MKEVMIVVHVHTLYQTLLSCIQSIFVSFILRYVEKLLESKSDEDSNRICKEMNDEERLIVQDLCNDLNYHCKKLRIQLYID