Scaffold Ga0268255_10131400

Overview

Basic Information

• Taxon OID: 3300030516
• Scaffold ID: Ga0268255_10131400
• Source Dataset Name: Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 740
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.0936
  • Long. (^o): -100.2988

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028550	Metagenome / Metatranscriptome	191	Y
F037411	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268255_101314001	F028550	GAG	VTAGPTGRKAEQMRRWLRSGPLAGAVLLLGLLGAGPAAAQQGPDHLHVDLSLVGCGTLQATGFKLPASARLDLRFVNIANGATLHQSTLTSGADGTLVLEAKVPLTGVHAVRMTVSRPGAAKPFAFSELTIPGECPLPFTGPARAPTLAGL
Ga0268255_101314002	F037411	N/A	VTKLHGRYHTNAWVRPSAPGTTVTIGLREYHDGRPVPGSNTLGWTVEKAGWRQFGAIHVASLGGSRLALEIMARDLPPGGYLDVDQVVLHLLPSR