Scaffold Ga0268255_10050587

Overview

Basic Information

• Taxon OID: 3300030516
• Scaffold ID: Ga0268255_10050587
• Source Dataset Name: Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1338
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.0936
  • Long. (^o): -100.2988

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010871	Metagenome / Metatranscriptome	298	Y
F049201	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268255_100505872	F010871	GAG	VLLVGSVAAADVPELGEPETRDEVRRRLGEAGCELVYSAASERWLARLDGPVPELEGHHPVLALGTPELAVLATCWLHLRFLPGEEAGSGDGRADQGWLDPGDLAELLGARLDGTGLPGVMERLATAGYLTLREGRVEAGPLLDTLDEPGAADQARALVARHQRLAHLRRRAAELDGNGGTSVSDGTDGEDDATD
Ga0268255_100505873	F049201	N/A	GARGDGVVHSPRPGMDAAGLREVVAATDPAVLAGLVAGRLRLPPAVARVRAGDALAALDEHLGRPEPVVVPLPEPTLLPVESPEVVPDFVLLAADVMTWLAGLGETDLARWVVGGTWAEATARMAAVVEAWSRWGPAGDGSLAAELDPRPRLEVVDHDEVGVISWTGVRAPASGPAAEGPVVVDLDDEGRSTGGLGVSPPDPLFTDGLGVSPPDPRREVAT