Scaffold Ga0268241_10106857

Overview

Basic Information

• Taxon OID: 3300030511
• Scaffold ID: Ga0268241_10106857
• Source Dataset Name: Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 654
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Amatitan, Jalisco
• Coordinates
  • Lat. (^o): 21.053
  • Long. (^o): -103.902

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018448	Metagenome	235	Y
F035953	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268241_101068571	F035953	AGGAG	MNRYRFPLLLLFILATFASLPVSAQEVEDTIKIKTRVVFLDALVKDKKTNLPISNLTTENFQVLDDGKPRNISYFTREGQARKPL
Ga0268241_101068572	F018448	N/A	KTGMKVGTTVARIKGGQARRIAEAGSIKLAVFEDQAFNGDFTKFRGSLNEALNVTWMPLIQTLSTTDAEQVYIFLKDAGDKFNVLVITIEQRDATVVQVTLSPKNLALLLRDPEGTGKAITQEATINDQE