Scaffold Ga0268243_1005751

Overview

Basic Information

• Taxon OID: 3300030510
• Scaffold ID: Ga0268243_1005751
• Source Dataset Name: Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2181
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Magueyal, Guanajuato
• Coordinates
  • Lat. (^o): 21.195
  • Long. (^o): -100.439

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017778	Metagenome / Metatranscriptome	238	Y
F042710	Metagenome	157	N
F083444	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268243_10057513	F017778	N/A	MAKGKTKGKRGGTRPGAGNPYKWKHRETKPVRLPIALIPKILEIAQLIDGQEYIDRVEHEFDDEEGKPKYYNGYYAAELSYLRIGNDALASEVNNLRAENEALKAQLMELNNGVLPEPLPDFSSLLLVREPKPLAKENRRKKRKDVIFVE
Ga0268243_10057514	F083444	GAGG	MLNNMSEVFSLEEVALQDTYLLPEYGKKVIYFVTAMQGESKTFLYIGFTINLRKKFKNHHRRIEFEFLNRIGYQINISWIVLPNAIREKEGHVVRRCYIQAFEPKLNEEQNSIATVQAEELRKQFKNWEQGRYEYLKKQIENWEQSGDDKDTMIKKIWEVCKQPFDDKHLILSSCKPQKTAV
Ga0268243_10057515	F042710	N/A	MAENSGENCDRSQNFTASSARDCRYVDVLKARAEKLGLDSDCVGDKRKRETWEAVLEDHGEEKPAKPQFVLKPNQP