Scaffold Ga0268243_1002717

Overview

Basic Information

• Taxon OID: 3300030510
• Scaffold ID: Ga0268243_1002717
• Source Dataset Name: Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2952
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter tropicus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Magueyal, Guanajuato
• Coordinates
  • Lat. (^o): 21.195
  • Long. (^o): -100.439

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035071	Metagenome	173	Y
F040320	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268243_10027172	F035071	GAGG	MREQRWEDDRANQLLDAARVILEAAGGWQGLEDDDDPARLLRFTELYFSEGMRLKVWPYVDQMNRGIEVGDLEDLRLGVLGLLRIILCADTGPQ
Ga0268243_10027173	F040320	AGCAGG	MEAPQLRGEHRFRYVARGVSLVIACMMCLGVFVVPLRVTGSEVPSALAMANLPLPDLETNENAPPLDGIYVVALGEEAEDADKDPLNSKLLRMLLLTLCFGLSVGWLFRNTQKQGALCSLAFVGASFGTACEDLPFLGVFRL