Scaffold Ga0268243_1000325

Overview

Basic Information

• Taxon OID: 3300030510
• Scaffold ID: Ga0268243_1000325
• Source Dataset Name: Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7485
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Magueyal, Guanajuato
• Coordinates
  • Lat. (^o): 21.195
  • Long. (^o): -100.439

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004321	Metagenome / Metatranscriptome	443	Y
F056883	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268243_100032517	F004321	N/A	VNISLHELSSERQWFVVDPSARETFTPRELTDAYKHFEEREPAICERRYGLKASAYQFGERVLLVYEESETGVVILTHPRS
Ga0268243_10003253	F056883	AGGAG	VSDTADTPFPPEEICAQAQGNAAAWILTIIAYLKERGLSVEDCVAFHGHSFAPAWEELRGRPVEEVAQLVALNALSVGNALRSLSSEDGRAELLVEGWPDEDLMSLLPLDRDDCDQIWNTYKPIMEHLGLGYAWQRQDDGVRITVELQSGR