Scaffold Ga0268243_1000105

Overview

Basic Information

• Taxon OID: 3300030510
• Scaffold ID: Ga0268243_1000105
• Source Dataset Name: Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16888
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Magueyal, Guanajuato
• Coordinates
  • Lat. (^o): 21.195
  • Long. (^o): -100.439

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006538	Metagenome	370	Y
F011968	Metagenome	285	Y
F012324	Metagenome	281	Y
F051446	Metagenome	144	Y
F057154	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268243_100010510	F011968	AGGA	MSQERIEDLNLVPPEEGFELYRYKNAEKMRTSGWSGLYWARKNEAGDYEIRAVTAEGEGYSYPGGVFSEEAFERYYEKDN
Ga0268243_100010512	F051446	AGGCGG	MLTLFVLPLILAFAPAAVWAFRAGGLRRLWLLGAFALLALILVALVLSAVYSVPSEWRVVLYFLVFVGPSVLFTNAVLTVASALESALWTQLIAAFVGSLVGLAVGFVAVVYGLGVSS
Ga0268243_100010524	F057154	AGGAG	MDGSSVTREAHHAAPRCLISLHVRANGTSLDGEGIQAWLEWEWEAMRWCVPVEISREDLEALVERKPWCWSGRSTA
Ga0268243_100010527	F006538	GGAGG	MPCELCGRGDMWIKTCRTPEGSRLLVCDECYRENSSVLVIVPGDRTVTARCDLCWRYGNPRDFVDVRPGGRKNAYSGTCGACAREGA
Ga0268243_100010528	F012324	GGAGG	MGSEEPRLPPGYRLDRSDPDVWALRRPEGWVVAYFSARGAIKEAIEEAAWEDHKGSREEQYP