NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302183_10290069

Scaffold Ga0302183_10290069


Overview

Basic Information
Taxon OID3300030509 Open in IMG/M
Scaffold IDGa0302183_10290069 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)633
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003631Metagenome / Metatranscriptome476Y
F033517Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0302183_102900691F033517N/ATEIGYQRFPLKRGTVGMLLPFGETLPHGAYEVYVDVNGEVAKRNAIYKQEMKTPVALQVVVGP
Ga0302183_102900692F003631N/AMELLLNLVWVLMALPAYWLWRRDADFRLARRVSSLQCLVALGCGLVLLFPVISATDDLHVMRTEMEESPTGKRTVRQAGSDKNSSWVNRLQGPPSPVASTDWQVIPEIGHLEISV

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