NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302192_10064474

Scaffold Ga0302192_10064474


Overview

Basic Information
Taxon OID3300030507 Open in IMG/M
Scaffold IDGa0302192_10064474 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1811
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017942Metagenome / Metatranscriptome237Y
F018655Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0302192_100644741F017942GGAMVMDSLYRVVYSLYRVMDSLYWVVDSLYRVVDSLYRVVDSLNMVVDYLYIVFDSLCRVVDSHYRLVDSLYRVVDSLYGVVDSIYVVVDYLYGVLESLYRVMDSFYM
Ga0302192_100644745F018655N/AVLDSLYRVVDSIYIVVDYLYRVVDSLYRVLDFLYRVVDSLYRVMDSLYRVVDSLYRVVDSLYRVVNSLYRVVDSLYRVVNSLYIVVDYLYRVFDSLYRVVDSFYRVVDSF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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