Scaffold Ga0311370_11720804

Overview

Basic Information

• Taxon OID: 3300030503
• Scaffold ID: Ga0311370_11720804
• Source Dataset Name: III_Palsa_E3 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 642
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003510	Metagenome / Metatranscriptome	482	Y
F061316	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311370_117208041	F061316	AGCAG	MVLDRMAQLDRESAERHKIEAMLRELLDARRNRKSEQLSVEQLALFAAA
Ga0311370_117208042	F003510	N/A	LSYKRLEEGTYAVPFGDSAKTRRREITVQELGALLSGIDLSQAARRKRYQHPE