NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268259_10189644

Scaffold Ga0268259_10189644


Overview

Basic Information
Taxon OID3300030499 Open in IMG/M
Scaffold IDGa0268259_10189644 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.rz (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)506
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.0936Long. (o)-100.2988Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048813Metagenome147Y
F102101Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0268259_101896441F048813N/APLICVHGAHVQGGGLRAQGVAIVPATLLRSALGHEQLLSEVDVELYATTARMRLRPAA
Ga0268259_101896442F102101GGAGVVQLGANAHGEVLEAGRVPDCYLGLRLDPADDARAAGVLIVSPAALLHPSTPRPDSTVLYELVTGHPDRAPRELVFLA

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