Scaffold Ga0268247_10500927

Overview

Basic Information

• Taxon OID: 3300030498
• Scaffold ID: Ga0268247_10500927
• Source Dataset Name: Agave microbial communities from Guanajuato, Mexico - Or.Ma.e (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 547
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Chenopodiaceae → Chenopodioideae → Atripliceae → Chenopodium → Chenopodium quinoa (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.0936
  • Long. (^o): -100.2988

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033294	Metagenome	177	Y
F035162	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268247_105009271	F033294	N/A	REEIFEHWKRGMNSVLNLNTTWTAANFLNYIEHSFSGTAADWYNTLNEDGKNELRVMESPEAMFRKICKEIEIEFIGSKLDSKEKKNGRER
Ga0268247_105009272	F035162	N/A	MRFLENYIAEFSQYYYKIGHNDINLGMFYDKLPYPINSIINEKYVAWLEKADVFDTLGTRISYLRKWVNEQCLDLRKQKTMKK