NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268247_10188731

Scaffold Ga0268247_10188731


Overview

Basic Information
Taxon OID3300030498 Open in IMG/M
Scaffold IDGa0268247_10188731 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - Or.Ma.e (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)954
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.0936Long. (o)-100.2988Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033294Metagenome177Y
F035162Metagenome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0268247_101887311F035162N/AMRCLENYIAVFSQYYYKFGHNDINLGTFYDKLPYPINFIINEKYMAWLEKADVFDTLGTRISCLRKWVNDQCLDLKKQKKIKNNILLLGYS
Ga0268247_101887312F033294GGAMNSVLNLNTTWIAANFLNYIEHSFSGTVADWYDSLNEEGKNELRIMEIAEAMFKKLCKGIEIEFIGSKLDSEEKTENGRER

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