Scaffold Ga0268247_10070160

Overview

Basic Information

• Taxon OID: 3300030498
• Scaffold ID: Ga0268247_10070160
• Source Dataset Name: Agave microbial communities from Guanajuato, Mexico - Or.Ma.e (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1509
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.0936
  • Long. (^o): -100.2988

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033294	Metagenome	177	Y
F074316	Metagenome	119	Y
F075601	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268247_100701601	F074316	AGG	LHSLEGFTTLAPQLNYITDTFLELKEELAKIKAEVKEIKKQLAVTHLSLVKRIRHSGKSDLGISSPIQHKYPFQNPKIKNPFPIQSLKAHEEVEKSPEKSLGKELEKGDGL
Ga0268247_100701602	F075601	N/A	MDYKQYNLEELQGMLNKEQNPEELNKIMSVIVDKQRILSDDYEESNNAQLEEEIYQQMNLIKLKDLNVLPLEEIRKKLDKEFKKNY
Ga0268247_100701603	F033294	N/A	MNSVLNLNTTWTTANFLNYIEHSFSGIVADWYDSLNEEGKNELGIKETSEAMLKKLCTEIEIEFIGSKLDSEEKPR