Scaffold Ga0268240_10166848

Overview

Basic Information

• Taxon OID: 3300030496
• Scaffold ID: Ga0268240_10166848
• Source Dataset Name: Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 550
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Rubritaleaceae → Rubritalea → Rubritalea marina (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Penjamo
• Coordinates
  • Lat. (^o): 20.686
  • Long. (^o): -101.875

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053536	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268240_101668481	F053536	N/A	PPMKLLLIASIFCAVVFSSAQNAFTQQRQAARTTIQEVKYKPVATAAPRECLSAFRDFFQYLQKPDTNIIREEAAQKRWLTQELRKALALKVATFASPADDPDFPSNTTFVGSWDYPTTFSIAASRRYGQRAVVDVLYKWGPKTNYPGDERTTSFIFLLEDGAWKLDDVYTFRGEFVQAESLN