NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268240_10055005

Scaffold Ga0268240_10055005


Overview

Basic Information
Taxon OID3300030496 Open in IMG/M
Scaffold IDGa0268240_10055005 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)861
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: Penjamo
CoordinatesLat. (o)20.686Long. (o)-101.875Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007997Metagenome341Y
F032436Metagenome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0268240_100550051F032436N/AWFHLSMAISNELSSDVAVAILANEKSPQELQKLKDIILEVHSTLQKMSEETRAYHFKKKPQEGANRANS
Ga0268240_100550052F007997N/APDISRAHREELIARLRVITGLTNLNFATDGSLRFDLSHASGGSASARELLSQAVQGTNVIVLEDASSRSDVAFCRVVPGSWTREVSTRPPAYVVLIDFTDFQQLSGDAEARAAFDVGWGLLHEIDHVVSGSDDGKGEKQIGECEDHINKMRLEVGLPVRAEYFFSRAYLTADANFNARYVRLSFERRNASQTKRYWLVWDAVTVGGLIGDAQRALVR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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