Scaffold Ga0268240_10029697

Overview

Basic Information

• Taxon OID: 3300030496
• Scaffold ID: Ga0268240_10029697
• Source Dataset Name: Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1090
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Penjamo
• Coordinates
  • Lat. (^o): 20.686
  • Long. (^o): -101.875

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023207	Metagenome / Metatranscriptome	211	Y
F070945	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268240_100296971	F070945	AGGAG	LRRLMLLLGLLAAMMLAASPVLAWQPGPNEGNKYSKNYYPNTYFKYCEPDGSNYYGDTKASSTKWCKKYYTEYQKKTFEGKQWYWVHVYYW
Ga0268240_100296972	F023207	AGGAG	LHRDQTISEMVEEVLANQAKSLAERTGQAFESALGVVVDTEAGKQLRELASGEHRHEKAREWQARVRFERAEQQLKHLFGSDVLSRLAGERHYSWVAGYLEWLEGKEARTPYHALLEEELASLQG