Scaffold Ga0268240_10000004

Overview

Basic Information

• Taxon OID: 3300030496
• Scaffold ID: Ga0268240_10000004
• Source Dataset Name: Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9814
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Penjamo
• Coordinates
  • Lat. (^o): 20.686
  • Long. (^o): -101.875

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004425	Metagenome	438	Y
F007136	Metagenome	357	Y
F010385	Metagenome	304	Y
F057938	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268240_1000000419	F057938	GGGGG	MENQGVPESWIGQEVVLHTISDREFLATLVEIKDFGFAYHFRDDEDIIFAPWSVLRWMRLAGEGDEFYRT
Ga0268240_100000045	F010385	GGAGG	VNESSAPHAHPSTEDHDRQDHPHACNGGWVTIGQIVLDPETGEEMEEYALYLCRRCADSR
Ga0268240_100000048	F004425	GGTGG	VNSTHLLPAMRELYSRRPEYLHHEPWELVHVLFSLGYVDGLADEGEIAAAVEVARGDYPQWRAA
Ga0268240_100000049	F007136	AGGAG	VEGCLMVGSITARTLDYFGLLVAASVFALLSAVVTAICVRYEARGLAWLWAAAFFGSALVAAYCLEKLL