NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311353_10637832

Scaffold Ga0311353_10637832


Overview

Basic Information
Taxon OID3300030399 Open in IMG/M
Scaffold IDGa0311353_10637832 Open in IMG/M
Source Dataset NameII_Palsa_E2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)927
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043255Metagenome156Y
F074603Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0311353_106378321F043255GGAGGMKKTKKPKVVMVGNTPITPVSAKEQREIKKRIEKRHEQLRRRYPEVHGKVVDFISHSVADGTLYVSVRFKDKTNFSVRYSCGMFVVGADISDM
Ga0311353_106378322F074603GAGGMLQFPAPLPPGEIPPLTCFEQFILCVALVAISTALLSFFLPRPLFCKLFKIAFPFMPDRLEDFDEKD

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