NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311360_10468641

Scaffold Ga0311360_10468641


Overview

Basic Information
Taxon OID3300030339 Open in IMG/M
Scaffold IDGa0311360_10468641 Open in IMG/M
Source Dataset NameIII_Bog_N1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1011
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080400Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0311360_104686411F080400GAGMLRVGLVALLLLALSVGSNAVEPGELPMTIVRAEQVARDRVVAWVNDTPIYQQDPWFEVAVRAGDKILEGEYQPSSPWETLPVFWKPGVEVQGRVHGHSLFLKRPNGVEIRFVILKRTAVSASKD

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