Scaffold Ga0311344_10148818

Overview

Basic Information

• Taxon OID: 3300030020
• Scaffold ID: Ga0311344_10148818
• Source Dataset Name: II_Bog_N1 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2522
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026465	Metagenome	197	N
F042119	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0311344_101488183	F042119	GAG	METIIREVNPARLAWGIFDHAKSDYVNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRMCPMRIFNGTPTNYRDKSGSAERAEEARNDPNGFYDRMTVKHGGQQFVLCGPEVQFVASQDEDIPTPQVQLALF
Ga0311344_101488186	F026465	N/A	ANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAAATFREGRDILARTDVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNAPRGTVANTVGKLREIAAESIQ