NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302270_10113489

Scaffold Ga0302270_10113489


Overview

Basic Information
Taxon OID3300030011 Open in IMG/M
Scaffold IDGa0302270_10113489 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1685
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044872Metagenome153N
F050080Metagenome145N
F062380Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0302270_101134891F044872N/APSDDQVLVAISETLFTVALNKDARQTVSCYLIQLYANHLFISDPTSEFGTCMRLARREIDELLSFTVLDRIAKYVWGRRDQFLDLWTRFAEDMEAYPQSTTHILQRVVVDTVQLLEAA
Ga0302270_101134892F062380GAGGMPGDFNDFGDFEELLFADPGSRGACKLIIAYHPAFPLALGRIECASGLPIDVRVNVLESTPLLHTAELVFTGKTTDLCELQMRLTQWAAQFPHLPPMPEEALYARDNPSAPSGPPEGVDQSGV
Ga0302270_101134893F050080AGGAGGMASSFVSRQRTSQRNTPPVAIKPFVRAAQNFALQTKQNREITDGSGQSMGTEVYTEIRMQGNVLAIRDEGIEDEFGRQYIGVVIQINPDKDRFVQTADPELHAQILKLNKGDLVYVTSEWHRNSSGRGFHARAKTIAVLELAVTPGPVAVEAAAEALTTAA
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