Scaffold Ga0299907_10562024

Overview

Basic Information

• Taxon OID: 3300030006
• Scaffold ID: Ga0299907_10562024
• Source Dataset Name: Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 893
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 42.9888
  • Long. (^o): -108.3994
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006289	Metagenome / Metatranscriptome	377	Y
F049538	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0299907_105620241	F049538	N/A	LAVLGLVGIALGVLDVVRGATAPHGVPFTYENYGGPGSVIAGLMLLAVALYLRSAWRERR
Ga0299907_105620242	F006289	GGAGG	VTPLFRRLLQALEQLRAHHRRRLAFFNPPIERRRPRIQMEDYAARHSIDHTLDRKAELRRLAPARPEAAARYHQLLTYELQGLREVVATLQSAAGGRELHDCLAESKAEIERLEIEVEWCTSLLAAEPRPPAG