NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311350_10597230

Scaffold Ga0311350_10597230


Overview

Basic Information
Taxon OID3300030002 Open in IMG/M
Scaffold IDGa0311350_10597230 Open in IMG/M
Source Dataset NameII_Fen_N1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)992
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010804Metagenome / Metatranscriptome299Y
F053933Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0311350_105972301F053933N/ARAVPGDPYQLRIYVPDGFAAKRVELSGGLASKMTTNGNLLTVDYTSSSGSDVEWKVIF
Ga0311350_105972302F010804AGGMRNTTGIRAFLLPLFVIVGTAAPITVDTKSLLVSVDAATCRWSAEVKGTPMRLNNVHFLPGDDPSGWTVVSSVNKEDSNNLGSFVTVTLRGKKAGQLDFEYQISVSKTNNDILVSLGRSNNTGKAVGIADMDYFVSNDARLGGSEERWISLGTRSRNRDYYDLWSVINLNTPRMYEVNQVVRDSDTGNALLMGHVSAFKGASRFEVAAGWGGKTPDRMQVRGYCNYKVTMPTGKRFAGEKLLIHFNRDALRAMEHQADLIAIAHDIRLKE
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