Scaffold Ga0311350_10440789

Overview

Basic Information

• Taxon OID: 3300030002
• Scaffold ID: Ga0311350_10440789
• Source Dataset Name: II_Fen_N1 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1169
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0469
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019774	Metagenome / Metatranscriptome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311350_104407892	F019774	N/A	VPGARFAIVVLVPVPVIPPGMIVQFPVAGRPLNTTLPVVAEHEAGCVIVPIIGAVGAGGATCIITSPDAPDMHPAELVTSKL
Ga0311350_104407893	F019774	GGA	MVAVVLVPVIFPGLIVHVPVAGRPFNTTLPVVAEHEAGWVIVPTTGAVGAEGGSLIITSADAFDIHPGSL
Ga0311350_104407894	F019774	N/A	VPVPVIDPGLIVQVPVAGNPLNTTLPVEAAHVEGCVTVTTTGAVGATGGAFITTTADGFDIQPAELVTLKL