Scaffold Ga0311339_10054148

Overview

Basic Information

• Taxon OID: 3300029999
• Scaffold ID: Ga0311339_10054148
• Source Dataset Name: I_Palsa_E3 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5344
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028922	Metagenome / Metatranscriptome	190	Y
F042484	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311339_100541486	F028922	AGGAGG	MSPLVRRSILKKFLIVVSCTPPVCVLTTLALAQHPAVGTAGGAVHISAPPISHVPISSAPIIRAPISTPRVSVAPSAGALGTAGFRPPRRPIRPFPPVLVVYESPFLLGGPFWGLNSCWSATCAPFWSWTLDYTTVSSPGPTNYLSQVYETPAYVYGEGGPDLPQLFLKDGTILNVTDYWLVDDELHFTMIEENGKKPAEHVIPFDVLDLQTTVDANTRRGFRFTLRNEPFEQYLRDHPEGSPPIVTRPRE
Ga0311339_100541487	F042484	AGGAG	MRKLFSLRGGLLAVIALAACCVPSWAQGNIRTVLFVKVKMGQEESWKAAVKDYVALVKKAGSDQGFTVWESQSGPPQHAVVWYSSKWKEKDEQDPKLKPVEADLARLFARLDTVTDGLDTWIDEMQPDTMIRSTAVPPMVRVGRTRVLSGKMDELKALFHDQIVPAVKKSGATDYGVAIARFGTPANEIHSYLGLSGWADLDGPIGAEKGMTAAEYKAFQTKLQPLIESMEWSMWKFQPELSYVPAAK