Scaffold Ga0311339_10006962

Overview

Basic Information

• Taxon OID: 3300029999
• Scaffold ID: Ga0311339_10006962
• Source Dataset Name: I_Palsa_E3 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18316
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003508	Metagenome / Metatranscriptome	482	Y
F006391	Metagenome / Metatranscriptome	374	Y
F047440	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311339_1000696217	F047440	GGAGG	MENYADLMQRLLEIQSGERRSPKLIAEDERLMRSLEKRNLAVAKLAQSSELSEG
Ga0311339_1000696221	F006391	GAG	VTEKVEKDTSKFDWVTERSSCALPKVFQALRLQVDEDLKTRNALRPDNSPYEFSVAGNGSGFTALLEAKDVHRSVIFSLAEHAILVRNEKGDPMFEVNATFSDEGDCKLKVNGEERALWQVRRMALEELLFRGF
Ga0311339_1000696222	F003508	N/A	MYKNKPKPETKQATLARIRKEMDEPRMAESTREQDGNQTTRQKLEKLPQSD