NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311339_10002743

Scaffold Ga0311339_10002743


Overview

Basic Information
Taxon OID3300029999 Open in IMG/M
Scaffold IDGa0311339_10002743 Open in IMG/M
Source Dataset NameI_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30145
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (92.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007233Metagenome / Metatranscriptome355Y
F033134Metagenome178Y
F037842Metagenome / Metatranscriptome167N
F044617Metagenome / Metatranscriptome154N
F085933Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0311339_1000274313F085933GAGMPDVPDPDFVGALCEIWFAINYAAYHLAYIRVYLQTASLQTHVDEIRKEEQAFRDASQTDLIVCRAHLAAFFWQVDHVFEALRVAINRGQKEHAALKYFWSWGQSLEKIEVSAIHKEINAYRNKSHELPAVIGCKWKDNGNGPEFVHHFLPTIAGHEAKEEIDINDQLQKYFELAANVWLSFSPGGYKEKFPRSFKFAVTVPHTFLGELPPELKGVPQLEVSVVAQDAPAPAAGEKKGTEVK
Ga0311339_1000274316F007233GGAGMANRKQKERKRQLNLDTFSDGIKGRVLEAVSISNELECRYISLEFEDKTELTITLDTRLTGKLELFDCKTGDHRLVREIGLIPDDAPVWRPKE
Ga0311339_1000274317F033134AGGAMTQEQESKQLITFNSLHIEVLGPRELGNSQPAIRGVTEFLHAVEHDVQKLLRERAETSPILEGFKLLFG
Ga0311339_1000274318F037842AGGAGGLKQKTVKARGEGVEYPALIGKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIAFSIDPELSTVKGGNIVRWRELKTRPVMRRVARK
Ga0311339_1000274321F044617AGGAGMSTSPQQSGQRPTVTAITAEERRKLDGRVRDKHQRLRNRYPEIYGKVVDWIHHYIEDGTLYVCIRFQDKTDFALEFNPQIVRVGTELCDSATDDFDVIRNYYKEERE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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