Scaffold Ga0311339_10002192

Overview

Basic Information

• Taxon OID: 3300029999
• Scaffold ID: Ga0311339_10002192
• Source Dataset Name: I_Palsa_E3 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33914
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (91.18%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017532	Metagenome / Metatranscriptome	240	Y
F103712	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311339_1000219231	F017532	GGAGG	VTRQPDDGEPSRRRPDYVIVVAASDWLKDRFPAAAASLDDALQAGQDLRREPEPDLEAEP
Ga0311339_1000219232	F103712	AGGAGG	MRDHRMGLNLMTDVLDVLGRHGYARGDDEHAGRAIFLISDLAHIYAGSQDHPFGPSITEIPPRTEPAPPAPASQDAVLVPVGEVKTLLVALDIAADDQRDRAGLCSDCTSQSCPACESRLRDAQAYDHLSVQLDQAAEAPGAAAARHPGHGPVADREAGQ