Scaffold Ga0311339_10000195

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311339_10000195

Scaffold Ga0311339_10000195

Overview

Basic Information
Taxon OID	3300029999 Open in IMG/M
Scaffold ID	Ga0311339_10000195 Open in IMG/M
Source Dataset Name	I_Palsa_E3 coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	123266
Total Scaffold Genes	109 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	89 (81.65%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3535	Long. (^o)	19.0473	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010632	Metagenome / Metatranscriptome	301	Y
F077556	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311339_10000195108	F010632	N/A	MPREAQRRFVRHNQGMRLFHCCLGLVMMSPLCMRGQQAPAKPGDAAPPATPLTTGPPISDDDKANQLSDQVGKLMVKCVNLLTAQDPLSLDYCKQQRDLADQYPPHMRLLDKMMAHDEYGIALAAFDHKQEALEEFDREVALVPKAVKPGSAEWSTAYWHRAMIYTQMGQMDKADRDYRAAEENFRKPSPAAESATVERKRRTILRQHAALLEKEGKPEAAHQLLQELAK
Ga0311339_1000019588	F077556	GAGG	MRTSILAIGPVAALLLLSSCRKPGNPNETAATAAGPQDPDLQVTAGGYHGHHFSGPLYSPRSSPLENGTTAYNVTYQHGVTVLSKEDTMRHLVAIQRDGSYVFDSSASQLAKLQPGGVLLLSGLALCSVVDIKKTSAGYLIKTEPAKITDAIKDGRLEGTYQIDFSKMRPTEGVADFDVDFAGYNYHAKFTPANDRMNVLATIKYGGSQGTLAYEGVGYFSNFVSTIRMQIKDGQLTVLSFSNQNLSGQVELKWFAFAADAMKSGSMAKITSWPAELLKSASLSRAAYHAPILLGAVPFDLRISLGFSFIPDFTSKSSVVEGSKLIKYSGSGGFIFDGQTRPSGSIQVEGDVAGQDNRVVSAGPVGFTAATEAPRLELMMGWPPVSSSVAGYLNFIASYGIVTNGRVSQLPCQTNILAFSVNAGAASSSPNTFADWLPGRGSPSVSLWQRTMKSAGTEGLMCPG

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