Scaffold Ga0311336_10799032

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311336_10799032

Scaffold Ga0311336_10799032

Overview

Basic Information
Taxon OID	3300029990 Open in IMG/M
Scaffold ID	Ga0311336_10799032 Open in IMG/M
Source Dataset Name	I_Fen_N2 coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	813
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0469	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025774	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311336_107990321	F025774	AGG	VLAVEPAIPPGFMVQFPEGKPLKTTLPVAVAQVGWVIVPTDGTEGVTGCVLITTLAEAAEVHPKELVTVKL
Ga0311336_107990323	F025774	N/A	IPPGLIVQFPEGKPLRIKLPVAVAQVGWVIVPTEGAVGVTGWVLIITLPVGVEVQPTELVTVKV

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