NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311336_10061885

Scaffold Ga0311336_10061885


Overview

Basic Information
Taxon OID3300029990 Open in IMG/M
Scaffold IDGa0311336_10061885 Open in IMG/M
Source Dataset NameI_Fen_N2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2910
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058545Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0311336_100618855F058545N/AVPTPTPTQTAVVLPATGVEYYFVTNKLQVPTTQEQTQTFALNVDGDPQQQPDNKFGDLFTMLTSAVQGIELQSNLDKAVSTGQVVSLHVVKADDPLNDPSVSWAIFTGQKALSAPTFNGSDKFALDSAAPVNLPIIGSLTNGHFTGGPGTARVQMFMLGQLVEVDLIGVRLEADLSAKGCANGKLGGGVTVDEFRSKLLPAIAQGLNEITKLNNTGANTLLQTFDSDKNGTITTQELESNSLLMLAISPDLDLLDASGKFNPNQDGVKDSYSLGLGFTCVPATFTAPLVLVP
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