Scaffold Ga0272449_1037106

Overview

Basic Information

• Taxon OID: 3300029977
• Scaffold ID: Ga0272449_1037106
• Source Dataset Name: Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-024-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2465
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5734
  • Long. (^o): -110.795

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080678	Metagenome	115	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272449_10371061	F080678	GGAGG	MFVRKVDARTTPIEEVYDNWEKIWMGEREIRRFLAYTGLSAPPYNLRVEHFLKFPFLHGISAGKFMRKLQKLGVTWSFNSDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI
Ga0272449_10371062	F088087	AGGTGG	MKASDGSVWMPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEKFINGGDE
Ga0272449_10371066	F092976	GGAGG	MTVQEILHWEQELRRVRQEFLQVWKKCPRCGAKWADIAWDAESDHEFLLVECRSGHLFRADEQFWLFDYDDSGVYVPSETETEVSAHAG