Scaffold Ga0272449

Basic Information
Taxon OID	3300029977 Open in IMG/M
Scaffold ID	Ga0272449_1011168 Open in IMG/M
Source Dataset Name	Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-024-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029977 Open in IMG/M

Scaffold ID

Ga0272449_1011168 Open in IMG/M

Source Dataset Name

Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-024-1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6030
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (93.75%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6030

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (93.75%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5734	Long. (^o)	-110.795	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5734

Long. (^o)

-110.795

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F080678	Metagenome	115	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F100012	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272449_101116811	F100012	GGAGG	MDRERVLQAIREAQAEYNIKDLDNFIRTAWEEGDVLQAQFVAEMVERAVEILFGRHFLWVHIVESEDCELWLPDGWYSFVAVHPETGQCLTFLNDPVYRWKSASFRARIRSADDAVDAVTRLAELIGQNLKSSVVV
Ga0272449_101116812	F069506	GGAGG	MQLEQQTFTDEQIKQAIEEVWQELLQEADAEDYSLEEYLEDYRKYWNDPDFPNDIPEIVVRTVERLIGKTLAWYCELGRDPAGFTGEYSFIVVDPKTQKCLTFRQYTSDGINIHYFLSVTGTVVYYEDIIRLVNKLISYISPALNS
Ga0272449_101116813	F086364	AGGAG	MEREKIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPYTIEEAVEALTDRNFGWHEDALKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILSIDDAVQVVEYFLRLVQQA
Ga0272449_10111687	F088087	AGGTGG	MKASDGSVWMPVTVSSAPCEICRRKSKSVVYECVQGKWAGVRVVACPEHAEKAIEKFINGGDE
Ga0272449_10111688	F080678	GGAGG	MFVRKVDAKTTPIEEIYDNWEKIWMGEREIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKFGVTWSFNRDVVRHGVLQAVGYKWRDIEEFEHMRVFCKEVSAHADV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272449_1011168

Overview

Ecosystem & Geography

Associated Families

Sequences