NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272380_10839472

Scaffold Ga0272380_10839472


Overview

Basic Information
Taxon OID3300029959 Open in IMG/M
Scaffold IDGa0272380_10839472 Open in IMG/M
Source Dataset NameEPA Superfund site combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)575
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location
Location NameEspanola, New Mexico, United States
CoordinatesLat. (o)35.992Long. (o)-106.0797Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026006Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0272380_108394721F026006N/AAAAASIDLPMTTLTISKLGDLTLVVKDGVPQTIVVRDRDLSGNNIGFSVNGIPYSGYVALSNNLTLQPGTMPLMFEHNGMLEFVVGDNVLLLKFNGTATKTVDLMKLTKTLYSVGDFTVAEGTGPFAGLKGTNGTFKLNLVCHIVAGEHPKVGTPVEVTFSGM
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