Scaffold Ga0272380_10038593

Overview

Basic Information

• Taxon OID: 3300029959
• Scaffold ID: Ga0272380_10038593
• Source Dataset Name: EPA Superfund site combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4450
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location

• Location Name: Espanola, New Mexico, United States
• Coordinates
  • Lat. (^o): 35.992
  • Long. (^o): -106.0797

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038519	Metagenome	165	Y
F060548	Metagenome	132	Y
F071903	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272380_100385932	F060548	AGGAG	MSTVINRPRQHRVTDFVDMQVATLMRNHAGEELCIEDLVDAAKKDMPNFEWNNSKIRNSVIRLEKKGLVNSRHEIRSKKLCRVPHLI
Ga0272380_100385934	F071903	AGGAGG	MNRTEQAAAKRQAELQEAFGHLEYFKRTGSALDQAMKTMDKDLRVCKKNERIWEKRIAKMQEKE
Ga0272380_100385936	F038519	AGGA	MKMYGIATDLGDDWAGPYVDQELLKKTLEIILQVDPNAEIVSKETDPFAEQIQTGLLPYRIHVDLVDGMPQLPADVSITWPPSSMEGIQVGNLEFREYFVWAENEKAALLRLATLNRAAQNTPKAAAAEEL