Basic Information | |
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Taxon OID | 3300029959 Open in IMG/M |
Scaffold ID | Ga0272380_10024404 Open in IMG/M |
Source Dataset Name | EPA Superfund site combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6293 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Espanola, New Mexico, United States | |||||||
Coordinates | Lat. (o) | 35.992 | Long. (o) | -106.0797 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F038519 | Metagenome | 165 | Y |
F071903 | Metagenome | 121 | Y |
F094797 | Metagenome | 105 | N |
Protein ID | Family | RBS | Sequence |
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Ga0272380_1002440410 | F071903 | AGGAG | MNRTEQAAAKRQDELQEALGHLEYFKRTALALDQAMKVMAKDLQVCKKNEQIWEKRIEKMQENA |
Ga0272380_1002440413 | F038519 | GGAGG | MKMSAIDYATGEDAAGPYTDEVLLQKTLEIIRQIDSNAEIISRECNPWSEQILAGLLPFRIHVDLVEGMPQLPAEVSITWPPSSMEGIQVGNQEFREYFVWAESEKAALRKLATLNKATQSYSPKAAAAEEL |
Ga0272380_100244045 | F094797 | GGAGG | VSSSEDLEDIMDPGGLPDPETFLPTPAEAKALSRDKGFETIWKGGILTGCHLVLKLQISFNAKGRLLYNGKPYSRGIWGWRPPKFIRLQGREAKEEPNSRNSHPEIYLTTQNGEQLKLDACPCGGELVKDSCECLYCRDCGTVYDHHR |
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