Scaffold Ga0265324_10000250

Overview

Basic Information

• Taxon OID: 3300029957
• Scaffold ID: Ga0265324_10000250
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39869
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (25.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072645	Metagenome / Metatranscriptome	121	Y
F082603	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265324_1000025016	F082603	N/A	MENLLPGKLAMYLAVKAVCEAKPAVWRRSAAFSDAFADFCGCVKRLVQWQPTIGIFHSATRAIAVEATVADTILVTEMDELMEQFEPVDVAFVDDYTAARSLEWTEEKTPAA
Ga0265324_1000025035	F072645	N/A	MSGMNPTLDKLGGTTMGTASHAHLLVAESGGLIARESPEAVMEEVEFRATHVSSVLAEMFEEIETGKHDSFWEPEAT