NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311346_10145099

Scaffold Ga0311346_10145099


Overview

Basic Information
Taxon OID3300029952 Open in IMG/M
Scaffold IDGa0311346_10145099 Open in IMG/M
Source Dataset NameII_Bog_N3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2836
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006047Metagenome382Y
F060524Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0311346_101450995F060524GAGGMGEISILRPRRSLVSIPVTEAVYCESCASVSNSSGGCCALCGNISIWPLAELVPQPPNTPSPRSAPAGLPVSNWLAGLHRAA
Ga0311346_101450996F006047N/ASNSQAVDVPGPVDHRLTAEIENFRSTLGESIYAEILRRSGHSATARTIPNAERQKQTIEKMQAAARGFERLRQLAEMAGDAQFFTVAERFKIASVMELPSLAALKQLVEELESLANQQVA

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