Basic Information | |
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Taxon OID | 3300029943 Open in IMG/M |
Scaffold ID | Ga0311340_10715356 Open in IMG/M |
Source Dataset Name | I_Palsa_N3 coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 856 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Abisko, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3535 | Long. (o) | 19.0473 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007671 | Metagenome / Metatranscriptome | 347 | Y |
F096550 | Metagenome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0311340_107153561 | F096550 | N/A | DALNVAKNMAEHLVLFMDGIDTFYDRFATVPRLPCDLKSE |
Ga0311340_107153562 | F007671 | AGTAG | VSSLAHATLGYSDSDLLRLTEMMSGGDPITSPHEIRRILDKYAYLDDWRTDYRIQSVRSSLNNTHITCIDGAILSYGLLELLFPATKRRLLAIHRRDPKKDEECGHCVTLYWAEDGRIGAFSKSSFTGLGHRDPVFSDETAIATSFAEAYVEMGFEPLYFGVSKLEEVAPEVDWRHGAGALNEISSLLQATYEYGFAIERKDDR |
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