Scaffold Ga0311340_10313750

Overview

Basic Information

• Taxon OID: 3300029943
• Scaffold ID: Ga0311340_10313750
• Source Dataset Name: I_Palsa_N3 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1486
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017180	Metagenome / Metatranscriptome	242	Y
F028872	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311340_103137501	F028872	GAGG	MPADRPHDVSSLTAAQLERAKRDLGISLALALPGSPVRVTIMTEMTAIDAELAERSGR
Ga0311340_103137502	F017180	GAGG	MTDAESATVEPPKHPLHAMTTYELTYYRRRLENALAFLDKQDPVPAIRADLQTALDGLLAEQESRTRLADAR