NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311340_10046849

Scaffold Ga0311340_10046849


Overview

Basic Information
Taxon OID3300029943 Open in IMG/M
Scaffold IDGa0311340_10046849 Open in IMG/M
Source Dataset NameI_Palsa_N3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5157
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032300Metagenome / Metatranscriptome180Y
F094248Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0311340_100468491F094248AGGAMITVFTPSFADDANTNAQNLTAREIVSRLSPDRFRVVMLGDGPPDPRILARENTEILRTSSHGNTARWLTRVLLSQVDIYFFPREGP
Ga0311340_100468492F032300N/AMHVLLLHPDDEFSGSWTRQHWDSVIDLGRAPKSFYDERAAALGCQVFSIFDLAVEVEDLQIWRHLFAPGLGRVVDRFGIDWWDVISMLLQPELQEIQLALRLADRLAGCRTLVASRPSVAAEVVRLQLGIPLQVLRRGLRQRLGDGVLRRGAAVLDLSSVQLRQVVYDKYDPHYVWRRKLAGPPAQSLRGKPSVPVVLLPTAYSNVTKTEVGYAELVPEQKFLIVLARESAAVSPLPPNVEAVRLASFAAKRCDKNELLQLELRWKQMEKLLQEHPEFRLGAQVGTLNKGARWLRWGLAVRDAWLRVFETRLVVGCLSGDDTNPYTRIPLLLAAQREVPAVACHHGALDCRMAFKNPRFSTYLAKGEMERDYLERVCGVGADRIRIGAASSPYRQSAAVWDERAPWITFFTEPYETDLWRVEAIYREVLPRLCAVARGARKSVVLKLHPFESARRRRRLVARILGKDDRRLVTVTDAPLSREIFQKTWCAVTVESTVAFECAAIGIPVFLCAWLRHALAGYATQYLRFGVGRRLEFPDELLRIGDRLGEAMSPADTASRLVQPATREGLLDVLCQPAPGGFRSMSKV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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