Scaffold Ga0119945_1015506

Overview

Basic Information

• Taxon OID: 3300029933
• Scaffold ID: Ga0119945_1015506
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 946
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020140	Metagenome / Metatranscriptome	225	Y
F025688	Metagenome / Metatranscriptome	200	Y
F053245	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119945_10155061	F020140	N/A	MTHKFAIVVDRNFYDKVQNNNDFYLRVLTLDVIRALSDEAESAEKYHASLFLKCAQSIAKEVRFFADKNAYIFYLELSSGYLENIFEEPLDDFE
Ga0119945_10155063	F025688	N/A	MKFILNIDGTNNGGKFLENYIGQTVDIESLYKDIDINSPPLATLKTEDNKQHSLQLIDVRFIGENVFIQCFVIQHDDKHGGKALLRLKPVVDLAKIINP
Ga0119945_10155064	F053245	N/A	NVTITIGDDDLKDLKEIFKNESSFQPQVHQDFLIIGILKQVLNNPKTEITEVQTNS