Scaffold Ga0119945_1003105

Overview

Basic Information

• Taxon OID: 3300029933
• Scaffold ID: Ga0119945_1003105
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2400
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005478	Metagenome / Metatranscriptome	399	Y
F015864	Metagenome / Metatranscriptome	251	Y
F021760	Metagenome / Metatranscriptome	217	Y
F104550	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119945_100310510	F005478	N/A	SHNLDELMYDDYDLDYSFANDYNLDEDSYYEYGVQELDEDYARDGQDYQDLAYRHYA
Ga0119945_10031052	F015864	N/A	MTDLRYSTGTELFEFLYEKCREDPDLLATIIDEYVASLSDSKLDELEDFLMNNFGDN
Ga0119945_10031056	F104550	N/A	MNLTKSFPPADAMIETFQQVDYRKLFNDYMDVVVNVCAFVAAIATILWEKIQVMKFRTPDMIAEYFYFSVNMIGEPGDEIVGLSVGNRYVGLYNNGIAWGVLNAQGALDS
Ga0119945_10031058	F021760	N/A	MCGPAFEYTREDFLNDASQEEWDAWEQKAAELELPLDYYLAEFV