NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119945_1002486

Scaffold Ga0119945_1002486


Overview

Basic Information
Taxon OID3300029933 Open in IMG/M
Scaffold IDGa0119945_1002486 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2706
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012017Metagenome / Metatranscriptome284N
F084179Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0119945_10024861F012017AGGLVFHALQLWFSYPPMAQKRILIGTPLKGDIPKSYFRTSLQMVTAEIPDVKLDWILLDGPAVQIARNEIAHYAVEQKFDELIFWDKDVLAQRNGEDVTASALMRLISHDRDIVTAVYSSRSLNTHWHVHPIKGEEPDEAGLQRVERASIGFSKIKVPVFKKIALANVDRVAMLVDPNKAPKLVPELFPMELKGRNTPEHRMKQIWAALSEVKNDEALRARIERELTIRYDEPNAFISEDFGFCDLARAAGYDIWMDTLMVLGHQASVVVPVETAKLLEMLSEPWRKEELAVIKQQMLEAQAAKKK
Ga0119945_10024866F084179GGAVSVWPKVGEAIVGKLCRNKQYNELRVVGEDGREMWTKVGNWQFTGGLVRGERVLVNRVWVSGDDTDAEYEVVRRMDVNEDVPQVPTVVEQPQPESGSDSGSESVAVPEQGTPVAILPQFQREEPDYPRKQESADDYIARIRAEAAMWANGQGR
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